FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006207055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411046
Sequences flagged as poor quality0
Sequence length101
%GC71

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14265734.70584800727899No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT20180.49094261956082774No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG17200.4184446509636391No Hit
GGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGG14230.34618996414026654No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG12770.31067082516312045No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCGATGACGTGTAGATC9240.224792359006048Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG5980.1454825007420094No Hit
GGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.12942590367014886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG5010.1218841686818507No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)