FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006207073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006207073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396194
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4247210.720000807685123No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTGTACCAGTGTAGATC6190.15623659116493435Illumina Single End PCR Primer 1 (96% over 33bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)