FastQCFastQC Report
Sat 6 Aug 2022
EGAF00006209342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006209342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506068
Sequences flagged as poor quality0
Sequence length35-75
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT297665.881818253673419No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC169043.340262573409107No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG143472.8349945066670883No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC24640.48689108973497636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)