FastQCFastQC Report
Fri 7 Oct 2022
EGAF00006210265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006210265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443959006
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC200911824.525458821303875TruSeq Adapter, Index 8 (100% over 50bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCCCGTATGCC5458490.122950315822628TruSeq Adapter, Index 8 (98% over 50bp)
NTCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC4686120.10555298882708103TruSeq Adapter, Index 8 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)