FastQCFastQC Report
Fri 1 Jul 2022
EGAF00006210367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006210367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1436898
Sequences flagged as poor quality0
Sequence length18-26826
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA100290.6979618595056852No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60310.4197235990306897No Hit
TGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATTGCTG47100.3277894464325234No Hit
TGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTCTT45980.3199948778549347No Hit
TGTACTTCGTTCAGTTACGTATTGCTCTACGAATGGTTTAGCGCCAGGTT42560.2961936059483693No Hit
TGTACTTCGTTCAGTTACGTATTGCTGGTTTCGCTGGATAGTAGGTAGGG32590.2268080267353702No Hit
GTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTCT27470.19117571323782204No Hit
GTGTACTTCGTTCAGTTACGTATTGCTCTACGAATGGTTTAGCGCCAGGT27190.18922707109342488No Hit
TTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTCT25060.1744034719235464No Hit
GTGTACTTCGTTCAGTTACGTATTGCTGGTTTCGCTGGATAGTAGGTAGG19750.13744886554230015No Hit
GTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATTGCT19100.13292523199280673No Hit
GTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTCT14370.10000709862495458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)