FastQCFastQC Report
Wed 14 Sep 2022
EGAF00006214651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006214651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230559165
Sequences flagged as poor quality0
Sequence length90
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG5286490.22928995253777917Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2615950.11346111528466024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)