FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006215241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7426
Sequences flagged as poor quality0
Sequence length51
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG205527.67304066792351No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAACTGACGCTGCCGACGAAGAGG2853.8378669539455963No Hit
GACTGGGAAACCCTGTCTCTTATACACATCTGACGCTGCCGACGAAGAGGA1792.4104497710746027No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCAGACGCTGCCGACGAAGAGG1071.4408833827093994No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG931.252356584971721No Hit
CTGGGCCGGTCATCTGTCTCTTATAAACATCTGACGCTGCCGACGAAGAGG660.8887691893347698No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCAGCCGACGAAGAGG520.7002423915970912No Hit
CTGGGCCGGTCAACTGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG520.7002423915970912No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATATGACGCTGCCGACGAAGAGG430.5790465930514408No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT430.5790465930514408No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAACAGACGCTGCCGACGAAGAGG380.5117155938594129No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTTACGCTGCCGACGAAGAGG370.4982493940210072No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTTCCGACGAAGAGG290.39051979531376246No Hit
CTGGGCCGGTCATCAGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG260.3501211957985456No Hit
CTGGGCCGGTCATCTGTCTCTTAAACACATCTGACGCTGCCGACGAAGAGG250.33665499596014004No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGAATAGG250.33665499596014004No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCGGCT240.32318879612173446No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAACTGACGCAGCCGACGAAGAGG240.32318879612173446No Hit
CTCCAACCCTCAAAAGTATCCTATAAAAATATTAAAATACACACCAAGAGC180.24239159709130084No Hit
CTGGGCCGGTCATCTGTCTCTTATAAACAACTGACGCTGCCGACGAAGAGG180.24239159709130084No Hit
CTTGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG180.24239159709130084No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGAAGATG170.22892539725289526No Hit
CTCCAACCCTCAAAAGTATCCTATAAAAATATTAAAATACACACCAAGACC160.21545919741448963No Hit
CTGGGCCGGTCATATGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG160.21545919741448963No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAAATGACGCTGCCGACGAAGAGG150.20199299757608402No Hit
CTCCAACCCTCAAAAGTATCCTATAAAAATATTAAAATACACACCAAGAGG130.1750605978992728No Hit
CTGGGCCGGTCATCTGTATCTTATACACATCTGACGCTGCCGACGAAGAGG130.1750605978992728No Hit
CTGGGCCCGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGAAGAGG120.16159439806086723No Hit
CTGGGCCGGTCAACTGTCTCTTATACACAACTGACGCTGCCGACGAAGAGG110.14812819822246162No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGAAGCTGCCGACGAAGAGG110.14812819822246162No Hit
CTGGGCCGGTCATCTGTCTCTTATACAAATCTGACGCTGCCGACGAAGAGG100.13466199838405601No Hit
CTGGGCCGGTCATCTGTCTATTATACACATCTGACGCTGCCGACGAAGAGG90.12119579854565042No Hit
CTGGGCCGGTCATCTGTCTCATATACACATCTGACGCTGCCGACGAAGAGG90.12119579854565042No Hit
CTCCAACCCTCAAAAGTATCCTCTAAAAATATTAAAATACACACCAAGACC90.12119579854565042No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAACTGACGCTGCCGACGAAGATG90.12119579854565042No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCAGACGCAGCCGACGAAGAGG90.12119579854565042No Hit
CTGGGCCGGTCATCTTTCTCTTATACACATCTGACGCTGCCGACGAAGAGG80.10772959870724481No Hit
CTCCAACCCTCAAAAGTATCATATAAAAATATTAAAATACACACCAAGAGC80.10772959870724481No Hit
CTGGGCCGGTCATCTGTCTCTTATACACAACTGACGCTTCCGACGAAGAGG80.10772959870724481No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)