FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006215263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62500
Sequences flagged as poor quality0
Sequence length51
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT5450487.2064No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGTCTCGCCAAGCAGCT5900.9440000000000001No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGACTCCT4140.6624No Hit
GACTGGGAAACCCTGTCTCTTATACACATCTGACGCTGCCGACGACTCCTT3460.5536No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3080.4928No Hit
GACTGGCACGCTCCGTGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT1940.3104No Hit
GACTGGCACGCTCCATTACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT1590.25439999999999996No Hit
GACTGGCACGCTCCATGACCGGCCAAGCAGTCTCTGCCTCGCCAAGCAGCT1220.19519999999999998No Hit
TACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT1130.1808No Hit
GACTGGCACGCTCAATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT930.1488No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCACCAAGCAGCT850.136No Hit
GACTGGCACGCTCCATGACCGGCCCAACAGTCTCTGCCTCGCCAAGCAGCT800.128No Hit
GACTGGCACGCTCCATGACCGACCCAGCAGTCTCTGCCTCGCCAAGCAGCT700.11199999999999999No Hit
GACTGGCACGCTCCATGACAGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT700.11199999999999999No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCGGCT680.1088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)