FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006215662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269164
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC3530.13114681012319626No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC2840.10551188123225988No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA2720.10105363272948835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)