FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006215807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences259008
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11000.4246973066468989No Hit
AATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTAT8910.34400481838398816No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8800.3397578453175191No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG7270.28068631084754136No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT6930.26755930318754634No Hit
GTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAA6410.24748270323696567No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC6350.2451661724734371No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT5700.22007042253521128No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAA5480.21157647640227326No Hit
GGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGG5320.20539906103286387No Hit
AGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCG4660.1799172226340499No Hit
GAGTCATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCAC3760.1451692611811218No Hit
CCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCC3750.14478317272053373No Hit
CCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTC3610.13937793427230047No Hit
CTAAGCTTCAGCTGTACGAGACCGTACCGCAAACCGACACAGGTGGACGG3540.13667531504818384No Hit
CCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTAC3440.13281443044230293No Hit
GTTCTAAGTTGGTCGTTAAGCGCACGCCGGACGGCCGAAGCCTGCCAAGG3400.13127007659995057No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA3330.12856745737583394No Hit
CCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAA3260.1258648381517173No Hit
GGTAGTGTGAAGCGCCTGCGCGCTTAGCATGATGGGGTCGCAGAGAATCG3190.1231622189276007No Hit
CCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGGACGATGGGCATGA3080.11891524586113171No Hit
GAGTACATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCA2910.11235174203113418No Hit
GCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTC2900.11196565357054608No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA2880.1111934766493699No Hit
GCGTAGGGATGGGAGGGCGATGAGGACTAGGATGATGGCGGGCAGGATAG2860.11042129972819371No Hit
AGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGA2860.11042129972819371No Hit
GATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTG2760.10656041512231282No Hit
GCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGG2710.10462997281937238No Hit
CTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCC2710.10462997281937238No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT2670.10308561897702001No Hit
ACTTTTCTTACGCTTAGTTCCACACACAGAATTTCGCCTACAGGGCTATC2650.10231344205584383No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC2620.10115517667407957No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)