FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006215811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523188
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19300.3688922528804177No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18370.35111661582452197No Hit
GGTAGTGTGAAGCGCCTGCGCGCTTAGCATGATGGGGTCGCAGAGAATCG5620.1074183658646605No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5330.10187542527733816No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)