FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006215821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374501
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12240.3268349083180018No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11860.3166880729290443No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG9950.2656868740003364No Hit
AATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTAT7830.20907821340930996No Hit
GAGTCATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCAC7220.19278987239019388No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT7220.19278987239019388No Hit
GTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAA6510.17383131153187842No Hit
GGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGG6220.16608767399820026No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT6190.16528660804644046No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC5590.14926528901124428No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAA5550.14819720107556456No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA5070.13538014584740762No Hit
GAGTACATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCA4890.13057375013684877No Hit
CCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCC4420.11802371689261176No Hit
AGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCG4240.11321732118205292No Hit
GCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTC3890.10387155174485516No Hit
CCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTC3810.10173537587349567No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)