FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006215841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1078407
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTAT23970.22227229608116414No Hit
GTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAA16770.15550715082524502No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC16380.15189070545721606No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAA14920.13835221766921021No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT14710.13640490093257926No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT14260.13223207935408432No Hit
GGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGG13240.12277368377616243No Hit
AGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCG11150.10339324577826368No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG11080.10274414019938669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)