FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006215869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences292977
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11100.37886933103963794No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10850.37033623799820464No Hit
GAGTCATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCAC5550.18943466551981897No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT4900.16724862361209242No Hit
AATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTAT4870.16622465244712042No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT4390.1498411138075685No Hit
GAGTACATGGAGCGTGCCAGTCCTGTCTCTTATACACATCTCCGAGCCCA3720.12697242445652732No Hit
GGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGG3570.12185256863166732No Hit
GTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAA3570.12185256863166732No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAA3430.1170740365284647No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC3300.11263682814691939No Hit
CCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCC3060.10444505882714343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)