FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006215892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737850
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTAT10670.14460933794131597No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG9580.1298366876736464No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8820.11953649115673916No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8340.11303110388290302No Hit
GTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAA7970.10801653452598765No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC7850.10639018770752862No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTT7830.10611912990445213No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT7620.10327302297214881No Hit
CATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAA7470.10124008944907502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)