FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006215911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006215911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17567498
Sequences flagged as poor quality0
Sequence length91
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAG685722639.03359488072803No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAG405077723.058360388030213No Hit
GGTTTCCCAGTCCACTATACTGACTTGAGAATAAAACGGAAAAAAATGTT8798385.008328448365271No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG495830.28224280998921986No Hit
GGGTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAG456760.2600028757652342No Hit
GGTTTCCCAGTCCACTATACTTTGCATGTCTCAGAAGAAGAAAAAAGAAA449180.25568808944791116No Hit
GGTGTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAG417450.23762632561563404No Hit
GGTTTCCCAGTCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG296830.16896543833390504No Hit
GGGTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAG234760.1336331445718679No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCGTGGCGAG223150.12702434917026886No Hit
GGTGTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAG218240.12422941502540658No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCTGCTTGGCGAG186160.10596841963494176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)