FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006216005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200
Sequences flagged as poor quality0
Sequence length51
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12261.0No Hit
GACTGGGAAACCCTGTCTCTTATACACATCTGACGCTGCCGACGATATGCA2211.0No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCGGCT157.5No Hit
GACTGGCACGCTCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT73.5000000000000004No Hit
GTCCAACCCTGTGAGACTGCTGGGCCGGTCATCTGTCTCTTATACACATCT31.5No Hit
GACTGGCAACCCTGTCTCTTATACACATCTGACGCTGCCGACGATATGCAG21.0No Hit
TCTCCTGACAATTATGATGGTCATGTCTTTGCATTTCTCTAATGTTTCCCA10.5No Hit
GACTGGGAAACCCTGTCTCTTATACACATCTGACGCTTCCGACGATATGCA10.5No Hit
GGGGGGTGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGG10.5No Hit
GGGGGGTCGGGGTGGGGGGGGGCGGGTGGTGGGGGGGGCGGGGGGGGGGGG10.5No Hit
TGTCACTCATTTGATTAACACTTCTTGATAATTTCTCAGTACTAGATCCAA10.5No Hit
GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.5No Hit
GTCTGGGAAAAAAAAACACAAAAACACAAAAAAAAAAACCAACCAAAATAA10.5No Hit
GTCCAACCCTGTGATGATTGCTGGGCCGGTCATCTGTCTCTTATACACATC10.5No Hit
GCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGC10.5No Hit
CTCCATGACATCCACATGATAATGCCCGACTCACCTGTAAAGTTTCAGCTA10.5No Hit
GGGAGGCCGAGGAGGGCGGATTACGAGGTCAGGAGTTCAAGACCAGCCTGG10.5No Hit
ACGCAGGTACAGCCGCCGCTTCCAGACCATTGACATCGAGCCTGACATCGA10.5No Hit
GTTAAAGGGTGCTTATATGACCAGCCCCCTAATTAAAAACCTGGGGCGCTG10.5No Hit
GTCCAACCCTGTGATGATTGATGGGCCGGTCATCTGTATCTTATACACATC10.5No Hit
CCCACAAGGAGGCCAGTGTGGCTGAAGCACACAAGCCACGGAAATAATGTC10.5No Hit
GACTGGGAAACCCTGTCTCTTATACACATCTGACGCTGCCGACGATCTGCA10.5No Hit
GACTGGGAAACCCTGTCTCCTATACACATCTGACGCTGCCGACGATATGCA10.5No Hit
CTCCAACCCTCACATGTATCTTATACACATATAACTCTAAAAAAGAAATCA10.5No Hit
CTGGGCCGGTCATCTGTCTCTTATAAACATATTAAGCTGACGACGATATGC10.5No Hit
GACTGGCACGCTCCATGACCGGCCCAGCCGTCTCTGCCTCGCCAAGCAGCT10.5No Hit
CTGGGCCGGTCATCTGTCTCTTATACACATCTGACGCTGCCGACGATATGC10.5No Hit
CCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAA10.5No Hit
CCGTGTGCCTGGAGCAAGGGCTTCACAGAGGCACATAGTGGCTGTCTCTTA10.5No Hit
GAAACCTGGAGATGAACCTACCCTCGGCAACTTTACAAGACTCCCTTGACA10.5No Hit
GACTGGCACGCCCCATGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCGGCT10.5No Hit
GACTGGCACGCTCCGTGACCGGCCCAGCAGTCTCTGCCTCGCCAAGCAGCT10.5No Hit
GACCAACCCTGTGAGACTGCTGGGCCGGTCATCTGTCTCTTATACACATCT10.5No Hit
GACTGGGAAACCCTGTCTCTTATACAATCTGACGCTGCCGACGATATGCAG10.5No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGGGGG10.5No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)