FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006216404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57883
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGATAAAGGGGAATTTCCATGCCGTCTACAGGGATGACCTGAAGAAATT2190.37834942902061053No Hit
GCAGACGTCTGGTTCAAAGAGTTGGATATCAACACTGATGGTGCAGTTAAC1440.24877770675327815No Hit
GACGTCTGCACCCTTTTTCCTGATATACTGAGGACACTCGGTCTCTAGCAA1110.19176614895565192No Hit
AGTAACTCAGCTACTCTTTGTGGCTTTCTTCATGGCTTTTTTTGTGGGCTG750.12957172226733238No Hit
GCTACTCTTTGTGGCTTTCTTCATGGCTTTTTTTGTGGGCTGCCACGCCCA610.10538500077743033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)