FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1077
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCCGGTCATCTGTCTGTCTCTTATACACATCTCCGAGCCCACGAGAC141.2999071494893222No Hit
GGGCCCGGGCCGATAGCCAATCATGTCCTCAATACCATCATAAAGGTTATC20.18570102135561745No Hit
GCCAGGAGTGGGCGTGTTTGGGACTGGCAGCTCCGCCTCCTTCGAGGCTGT20.18570102135561745No Hit
CACAAAATTGCTTACTTGGCCAGGCATGGTGGGTCACGCCTGTAATTACAG20.18570102135561745No Hit
GATGCACCATTGGCTCCTGTTTGAAATGAGCAGGCACTCCTTGGAGCAAAA20.18570102135561745No Hit
CCAACATAGCCAGAGACAGCAGGCTAATGGAGATGAAATCATCCATTCTGC20.18570102135561745No Hit
GATGGAGTCTCTATTAATTGAAAAAAGGAAGACTCTGAGTGGAGAGACTTT20.18570102135561745No Hit
TCCAGCATGTGGGCAAAGCCTTCAATCAGGGCAAGATCTTCAAGTGAACAT20.18570102135561745No Hit
AGCACTAGAAAGTTTGACAAGAGTATAAGTTAATTTTGCAAATTTTGATTT20.18570102135561745No Hit
CAGTAGTGGTGGACTTGCCCGAATCTACGTGTCCAATGACGACAATGTTGA20.18570102135561745No Hit
AACTGAGGCAGGCATTCATAGCTGAGACACCAAGAGGTGGTTAAAGCCATA20.18570102135561745No Hit
CTTCATGTCTGGGTTTTTCATGATAGTGAAGTTGGAAGCCAGCAGTGCAGC20.18570102135561745No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC20.18570102135561745No Hit
CCCTGTAGGTTGCTTTGGGTTTTCTAGAATTCCACGTAGATGGAATCACAC20.18570102135561745No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC20.18570102135561745No Hit
GCCCAGTTCGGATCTCAGGTCCTTTAGTGTCTAGAGCCACAGCAACGGGCC20.18570102135561745No Hit
CTTATATATCTCCTGCCTCAGTCCTGGAATCATTCATTTCATCACAGAGCC20.18570102135561745No Hit
GGTCTGCATTGAATGTGTTCTGGAACCTCTTAAACACTGTCTCTTATACAC20.18570102135561745No Hit
CCATCATGTCTGGAGTTACGCTGTTCTTTATGTATTGAGAGAACTGTTTCT20.18570102135561745No Hit
GTCAGACTTTTCAGGCACTGCACCCTCACGGCCTCCACCAGGCTGTCTCTT20.18570102135561745No Hit
CATTCACCTAAGCAAGTAATTCTTAAAGATCTTACAGAAACGCAGAGTCAA20.18570102135561745No Hit
GATTTCCACTATTCACCACAGATTGGTCAACCAGTATTTCAAAACTATTAT20.18570102135561745No Hit
AGGAAAACCTGGGTATCTCAAGGACTTTCAGAAACCATGAAGGCTTCATGT20.18570102135561745No Hit
GTATCAACGCAGAGTACATGGGAGAAGCGTGACCTCCTTATGGGCTCTAGT20.18570102135561745No Hit
GTCCAACCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCC20.18570102135561745No Hit
GCTCACACCTGTAATCCCAATGCTTTTGGAGGTTGAGGCAGGAAGATTGCC20.18570102135561745No Hit
CCTATCCGGTGGACTCTTGTGGTCTCAGGTGGGGCCAACCTTTTCTGTGCA20.18570102135561745No Hit
CTCTGCTTCCTGTCATAACGCCGCTTTCCCTGGGCGTACAGAGAATCCTTG20.18570102135561745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)