FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006216471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1077
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGATGACCGGCCCAGCAGTCTCTTATACACATCTGACGCTGCCGACGAT121.1142061281337048No Hit
CCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTC30.2785515320334262No Hit
GATTGACTCTGCGTTTCTGTAAGATCTTTAAGAATTACTTGCTTAGGTGAA20.18570102135561745No Hit
CCCAAGCCCTACTGCATTCCTGGTGTGATTCCATCTACGTGGAATTCTAGA20.18570102135561745No Hit
CCCAAAAGTGCTGTAATTACAGGCGTGACCCACCATGCCTGGCCAAGTAAG20.18570102135561745No Hit
CTGAAGGGCAGGTGCAGGCAGCTAGGTGATGGCAAGAGATGTTCACTTGAA20.18570102135561745No Hit
CCTGGTGGAGGCCGTGAGGGTGCAGTGCCTGAAAAGTCTGACCTGTCTCTT20.18570102135561745No Hit
ATACAGGACTAGGAAGCAGATAAGGAAAATGATTATGAGGGCGTGATCATG20.18570102135561745No Hit
TGTTTAAGAGGTTCCAGAACACATTCAATGCAGACCCTGTCTCTTATACAC20.18570102135561745No Hit
GTTAATAGCTGGCCTTGAACGCTCTGTCAGAAAATGTCCCCCTCTGTCTCT20.18570102135561745No Hit
AAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTACGCCCAGGGAAAG20.18570102135561745No Hit
GGTTGGACCTGTCTCTTATACACATCTGACGCTGCCGACGATAAGGCTCGT20.18570102135561745No Hit
TCCTCTACCGGCCCGTTGCTGTGGCTCTAGACACTAAAGGACCTGAGATCC20.18570102135561745No Hit
CCTTTGAGACTAGAGCCCATAAGGAGGTCACGCTTCTCCCATGTACTCTGC20.18570102135561745No Hit
CATCTGTACTTGTATGGTCATGTATGGCATGGGCTCAAAATCAAAATTTGC20.18570102135561745No Hit
CCTCGAAGGAGGCGGAGCTGCCAGTCCCAAACACGCCCACTCCTGGCCTGT20.18570102135561745No Hit
CTTATCACCTCCCAAAGTCTCTCCACTCAGAGTCTTCCTTTTTTCAATTAA20.18570102135561745No Hit
GCCTTGCAACACCCCAGTGGCAACAAACACACCCCGCACCCAGATCTTGGT20.18570102135561745No Hit
GCCATCATGAGCAGCTTCTTAGGCACAGGTGCGGAGACGATGCCAGTGCCC20.18570102135561745No Hit
CCTACATGAAGCCTTCATGGTTTCTGAAAGTCCTTGAGATACCCAGGTTTT20.18570102135561745No Hit
GCAATCTTCCTGCCTCAACCTCCAAAAGCATTGGGATTACAGGTGTGAGCC20.18570102135561745No Hit
GAGTTGGGTAGACTGCACAGAAAAGGTTGGCCCCACCTGAGACCACAAGAG20.18570102135561745No Hit
CTGATAAAGGATACTCCAAGGCCAAAAGACAACCCATGTGAAGCAGTCGAG20.18570102135561745No Hit
CTGGAAATTTGTTGTCTAGTGGTTGTGGGTGAATAAAGGAGGGCAGAATGG20.18570102135561745No Hit
AGATGACCGGCCCAGCAGTCTCTTATACACATCTGACGCTGCCGACGATAA20.18570102135561745No Hit
ATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCT20.18570102135561745No Hit
GCGTCATTGGGCTTTTGCTCCAAGGAGTGCCTGCTCATTTCAAACAGGAGC20.18570102135561745No Hit
GGCAGAAGCTTCAAAGAGTAGATGGAGCCTGGTTTTTGCTTGGAATCAGAT20.18570102135561745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)