FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences858460
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG66510.77475945297393No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC14760.17193579199962725No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA12660.14747338256878598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)