FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1499500
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG60450.40313437812604197No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC19240.12830943647882628No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA17580.1172390796932311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)