FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006216543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2781307
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC123380.4436043917481961No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA100780.3623476300890193No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG84770.3047847648605494No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA66030.23740637045820542No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT54780.19695776122520817No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACG52050.18714223205133412No Hit
CCTAGTTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT39610.1424150588194687No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC34540.12418621892513124No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG33350.1199076549262631No Hit
CCTGATAAAGGGGAATTTCCATGCCGTCTACAGGGATGACCTGAAGAAATT30390.10926517640807003No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT29820.10721578020693148No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAA28610.10286530756942688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)