FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2145252
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG53580.24976086725475607No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC52880.2464978473391471No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTATA47460.221232750278289No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCA34080.15886245531993445No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT25680.11970621633262667No Hit
CCTAGTTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT25360.11821455008549113No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG21860.10189945050744621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)