FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9560360
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG428022844.770573493048374No Hit
TGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG273210728.577448966356915No Hit
TCTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG5156075.393175570794406No Hit
TCTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG3315083.467526327460472No Hit
TGATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG742050.7761737005719449No Hit
TGTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG596000.6234074867473609No Hit
TGATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG469110.49068235924170217No Hit
TCATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG396490.41472287654439793No Hit
TGTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG375540.3928094757937986No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG370980.38803978092875163No Hit
TGTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG324500.3394223648481856No Hit
TCATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG258600.27049190616252944No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG236630.24751159998159067No Hit
TGTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG203980.21336016635356828No Hit
TCTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG191650.20046316247505325No Hit
TCTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG185980.19453242346522517No Hit
TGATACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG158310.16558999870297772No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG123730.12941981264303856No Hit
TCTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG121830.12743243978260232No Hit
TCTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG120530.12607265835177756No Hit
TTTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG120490.12603081892313678No Hit
TGATACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG102550.1072658351777548No Hit
TGTTTCCCAGTCCACTATACTGACGTCTCCTCCTATTGCTCTGACCTGTCT101230.10588513403260964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)