FastQCFastQC Report
Wed 6 Jul 2022
EGAF00006216637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9078468
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG380781641.94337634940168No Hit
TGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG277841530.604447798901752No Hit
TCTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG4808025.296069777411783No Hit
TCTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG3492523.8470367467286333No Hit
TGATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG707040.7788098168105015No Hit
TGTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG583350.6425643621809318No Hit
TGATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG497920.5484625820127361No Hit
TGTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG400720.4413960593351213No Hit
TCATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG381420.420136965840492No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG337660.3719350004868663No Hit
TGTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG307130.33830597849769367No Hit
TCATTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG280760.3092592274379333No Hit
GGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG245360.27026586424053045No Hit
TGTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG217900.2400184700766693No Hit
TCTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG187280.20629031241835077No Hit
TCTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG179190.19737911726956575No Hit
TGATACCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG156450.17233083819869166No Hit
TCTTACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG133620.14718342345867166No Hit
TGTTTCCCAGTCCACTATACTGACGTCTCAAACATGAGCCGCTTGGCGAGG131860.14524477037315106No Hit
TCTATCCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG130590.14384585593075835No Hit
TTTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGG113980.12554981743615773No Hit
TGATACCCAGTCCACTATACTGACGTCTCCAACATGAGCCACTTGGCGAGG112200.12358913420193803No Hit
TGTTTCCCAGTCCACTATACTGACGTCTCCAACATGAGCCGCTTGGCGAGA110780.12202499364430211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)