FastQCFastQC Report
Fri 8 Jul 2022
EGAF00006216648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006216648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364829037
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGCCAAATACCTCACAT7092800.19441434975473185No Hit
CAGACGCGCAACATAACTTAAAGC6918160.1896274500760201No Hit
CAGACGCGCTCAGTATGCTCAGTA5572240.15273564971200468No Hit
CAGACGCGCTCACAATGTAAGCGG5537390.1517804077639796No Hit
CAGACGCGCAGGCCTTGCAAGTAA5050820.13844347592321715No Hit
CAGACGCGCCATTACACGATTACG4815870.13200347317749273No Hit
CAGACGCGTTGGTAAACCGCCTAC4208430.11535348267797006No Hit
CAGACGCGATGGCCTTGTCCTTAT4156340.11392569062423615No Hit
CAGACGCGCCCAGCATGGCCACAT4054810.11114274327895671No Hit
CAGACGCGGAGGGAGCTGCTAATC3913410.10726695528897826No Hit
CAGACGCGATATTGGGAGGTGGAG3811300.10446811008631421No Hit
CAGACGCGCCTTGTTCTCACTAAT3793760.10398733695092367No Hit
CAGACGCGTAGTCAAACCTTGTTG3777060.10352958829864191No Hit
CAGACGCGCGAGTTAGAACAGGCT3682520.10093823754494628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)