FastQCFastQC Report
Thu 7 Jul 2022
EGAF00006219773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006219773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109848492
Sequences flagged as poor quality0
Sequence length51-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1473070.13410015678685874No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT1238860.11277897196804486No Hit
TGTTTGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGC1178240.1072604619824913No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1148800.10458040698455834No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT1143670.10411340011841036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)