FastQCFastQC Report
Thu 7 Jul 2022
EGAF00006219790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006219790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68492789
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCT1365750.19940055295455994No Hit
AAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCT1271960.1857071406451269No Hit
AACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCT1194250.17436142073291833No Hit
GTCTGGTTTCGGGGGTCTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTA1179560.17221666940734448No Hit
TATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACT1172630.1712048840645108No Hit
CAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCC1158860.1691944534482309No Hit
ATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACC1084440.15832907607251911No Hit
AGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTT1081730.15793341398318586No Hit
AAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTC1080890.15781077333556967No Hit
AAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAG1048070.15301902803227943No Hit
TATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTAC1047480.15293288757740614No Hit
AGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGAC1026190.14982453116341926No Hit
TAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGA992030.14483714482702698No Hit
CAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCC989710.14449842303837268No Hit
CTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTA982610.14346181756447382No Hit
CCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTC971920.14190106932278668No Hit
TGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATC947020.13826565012559205No Hit
TTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCT917690.13398344751299293No Hit
CTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTA913110.1333147639819427No Hit
CAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCA905340.13218033799149279No Hit
CAAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATT901410.13160655496157414No Hit
TTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCT899310.13129995334253364No Hit
CTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGG893990.13052322924096432No Hit
GGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTC889010.1297961454015254No Hit
CTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGC886720.1294618036360003No Hit
AGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGG871180.1271929516551005No Hit
TTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGT855370.12488467946603837No Hit
ATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGC853870.12466567830958088No Hit
AAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGG847830.12378383365291198No Hit
AAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAG845410.12343051178716055No Hit
TTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTC843750.12318815050734756No Hit
ATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTT842960.12307280989827996No Hit
AGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGC841280.12282752860304753No Hit
GGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATA840580.12272532806336736No Hit
TATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTA839960.12263480758536492No Hit
TGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTAGAGGGTTC839480.12256472721529853No Hit
AAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACC838900.12248004676813497No Hit
TTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGG836330.12210482478673776No Hit
CTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGT835880.12203912443980053No Hit
TAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTC835730.12201722432415477No Hit
ATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCT833190.12164638236588671No Hit
GGGGGTCTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT831270.12136606088562112No Hit
CGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGC827540.12082147800989679No Hit
AGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCC820260.119758592397223No Hit
TACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTT815510.11906508873510757No Hit
TATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTC809690.11821536424805246No Hit
AAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTT805550.11761092105622972No Hit
ATTTAGAGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTT802910.11722547902086453No Hit
ATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTAT802130.11711159841950661No Hit
AAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCG799600.11674221646894829No Hit
CTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTA798850.11663271589071954No Hit
TCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCT797770.11647503505807012No Hit
TAACAGTTAAATTTACAAGGGGATTTAGAGGGTTCTGTGGGCAAATTTAA797530.11643999487303693No Hit
TACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTT792490.11570415098733972No Hit
CTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGT788750.11515810810390566No Hit
AAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTT784550.11454490486582462No Hit
AACTAAGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTT784320.11451132468850114No Hit
ATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCG784140.11448504454972626No Hit
CATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTA783790.11443394427988617No Hit
CTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCA768820.11224831273844024No Hit
TCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCGGGGGTCTTAGCTTT767630.11207457182098395No Hit
CAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTT764720.1116497095774564No Hit
TATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATC758790.11078392500559438No Hit
AATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTATCACCAGG751560.10972833943146922No Hit
CCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAG751540.10972541941604978No Hit
CAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATC751160.10966993912308054No Hit
AGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGAC748520.10928449708771532No Hit
CTAACAGTTAAATTTACAAGGGGATTTAGAGGGTTCTGTGGGCAAATTTA748190.10923631683329466No Hit
GTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCTAT746620.10900709562286916No Hit
CAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTG744900.10875597429679787No Hit
CTATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATAT742580.1084172525081436No Hit
ATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTG742490.10840411243875614No Hit
TAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTATATTATGCTT740570.10812379095849053No Hit
CTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAACCAGCT740320.10808729076574762No Hit
AGGGTTCTGTGGGCAAATTTAAAGTTGAACTAAGATTCTATCTTGGACAA738790.10786390958616096No Hit
CAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAAACCTGGCG735170.10733538679524351No Hit
ACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTT734900.10729596658708117No Hit
CAAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTTA732510.10694702474445886No Hit
AGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGC723400.10561695772090694No Hit
TCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTT722040.10541839667238546No Hit
CTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCTTA721610.10535561634086765No Hit
CTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTT719960.1051147150687644No Hit
GCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCT719220.10500667449824537No Hit
CTATCACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCAC717670.10478037330323928No Hit
TATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGCT716230.10457013219304005No Hit
CTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTATATTA714150.10426645058941898No Hit
TCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGG711810.10392480878534528No Hit
CTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGG706470.10314516466835655No Hit
AGTTATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTG706080.10308822436767759No Hit
ATAGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTTTCG704590.10287068321892981No Hit
ATTTCTAGTTAATTCATTATGCAGAAGGTATAGGGGTTAGTCCTTGCTAT695360.10152309610286128No Hit
TAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTACATAGA694740.10143257562485884No Hit
ACCTATAAATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTA693470.10124715464572481No Hit
ATCTTCCCACTATTTTGCTACATAGACGGGTGTGCTCTTTTAGCTGTTCT692570.10111575395185032No Hit
AGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAA690450.10080623231739037No Hit
TCTTAGCTTTGGTTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGC689600.10068213166206447No Hit
CACCAGGCTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATT686150.10017842900221219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)