FastQCFastQC Report
Fri 8 Jul 2022
EGAF00006219922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006219922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165811083
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3133090.18895540293889765No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT2630840.15866490661544017No Hit
ACTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTAT2109270.12720922883062044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)