FastQCFastQC Report
Fri 8 Jul 2022
EGAF00006221120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006221120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1019696157
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGAT29849029929.27247464364034No Hit
ATGCCTTA25827076725.328208332161044No Hit
TAATGACC22820624522.379827896124944No Hit
CGTATCGG22485421122.05109918836342No Hit
ATGCCTAA11036620.10823439829831584Illumina PCR Primer Index 3 (100% over 8bp)
TAATGACA11014200.10801452888088113No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)