FastQCFastQC Report
Fri 1 Jul 2022
EGAF00006221123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006221123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179026570
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTACAC5200178729.046966045319415No Hit
ATTGCGTG4967990627.750018335267217No Hit
CGACTTGA3888144221.71825221250678No Hit
TACAGACT3700519320.670223978485428No Hit
CGACTTAA2343020.1308755454567442No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)