FastQCFastQC Report
Mon 8 Aug 2022
EGAF00006223699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006223699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11371545
Sequences flagged as poor quality0
Sequence length100
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCATACCAAATCTCGTATG1023740.9002646518129243TruSeq Adapter, Index 22 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATACCAAATCTCGTAT343540.3021049470410573TruSeq Adapter, Index 22 (97% over 38bp)
NATCGGAAGAGCACACGTCTGAACTCCAGTCACCATACCAAATCTCGTAT196390.17270300561621135TruSeq Adapter, Index 7 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)