FastQCFastQC Report
Sun 24 Jul 2022
EGAF00006263610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18452873
Sequences flagged as poor quality0
Sequence length42
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4001422.168453660305363No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA647990.3511594102446811No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA300140.16265217887751138No Hit
CGGTATGGAGGATAAAAGTGAAAAGTAGATGAGAAAAAACAG272340.14758677415706487No Hit
AAATAATGGATTATAAAATAGCATTTGCAAGCTTCATGGCAA231310.12535175416857852No Hit
GTGCGGTGGACGCAAGGAAAATAAAAAAAGTTGTCCAATAAA212130.11495770875353664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)