FastQCFastQC Report
Thu 21 Jul 2022
EGAF00006263611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25434262
Sequences flagged as poor quality0
Sequence length42
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT491328019.3175646299468No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1744850.6860234434952349No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1108980.4360181553528072No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT997670.3922543535959487No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT945970.3719274418105782No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC535720.210629268504036No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT445940.17533042633594006No Hit
TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT310110.1219260853725577No Hit
TTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT274080.10776015439331403No Hit
TTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT269030.10577464366766372No Hit
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT262240.10310501637515569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)