FastQCFastQC Report
Thu 21 Jul 2022
EGAF00006263612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25434262
Sequences flagged as poor quality0
Sequence length42
%GC23

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11780394.631701128186853No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8705873.422890744775689No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5051061.9859274863174723No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2444280.9610186448500058No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA841190.33073104303163975No Hit
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA795850.31290469524926656No Hit
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA784810.3085640935836864No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA781770.30736885544388903No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA643690.25307988098888023No Hit
TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA547060.21508782130183293No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA514130.20214071868883007No Hit
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA476590.18738110034409491No Hit
GCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA402330.15818426341601732No Hit
ACTGTGAAGAAATAAATGTTTGTGGTTAAAGCTACCCAGTCT352520.13860044376361305No Hit
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA341200.13414975437463056No Hit
ACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA307810.12102179335889518No Hit
GTTCTAAACTCAGGATTAAGAATCTCACTCAAAGCCGCTCAA295590.11621725057326215No Hit
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA292270.11491192471006234No Hit
TGGCCAAAACCTCAGCTTTTATCATTTTAAATCTCTTTATTA291620.11465636392359252No Hit
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA278480.10949010433249448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)