FastQCFastQC Report
Tue 26 Jul 2022
EGAF00006263613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22752589
Sequences flagged as poor quality0
Sequence length42
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT389686617.127132213393388No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1479820.6503963131404518No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1045570.45953891225301874No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT987990.43423190213649976No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT893190.3925663141016611No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC571700.25126810843372593No Hit
TTTTCTTTACTATTCTTTTTAAAAAAAGTTTCACTGTGTAGA499920.21972005032042727No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT475760.20910147851745572No Hit
TTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT333690.14666023282009796No Hit
TTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT296240.13020056750464748No Hit
TTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT288470.12678557152331105No Hit
TTTCTTTACTATTCTTTTTAAAAAAAGTTTCACTGTGTAGAG284130.12487809629049247No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT256450.11271244780099529No Hit
ATTCTTTTTAAAAAAAGTTTCACTGTGTAGAGAACATATATG231280.10164997047149228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)