FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006263616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19521877
Sequences flagged as poor quality0
Sequence length42
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5980073.063265893950669No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5936013.0406963428772755No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2475391.2680081940891237No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1107000.5670561288753125No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA484490.24817798001698302No Hit
GGGGAAAGTCAGCTAGCTCATGGCTTCAGCAGTGGGAGAAGA439460.22511155049281376No Hit
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA427630.21905168237664852No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA373770.1914621222129409No Hit
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA350620.17960363135163693No Hit
ATGGTGGCGAGAGAGGGGATTAACCTAAGCATCCAACAAGTG298200.15275170517671022No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA283670.14530877333158077No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA274680.14070368335995562No Hit
TCTACAGGAAGAAAATGCTCAACAGGAGTAGACTTGATAAAT269470.13803488260888028No Hit
TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA258610.13247189294349104No Hit
AGGATTTGGTGCATGATTTTTTTTTTTTTTTTTTTTTTTTTT239000.12242675230460678No Hit
TTTCCGCGAACCGGAATTTTTTTTTTTTTTTTTTTTTTTTTT225640.11558314807536181No Hit
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA218150.11174642684205008No Hit
AATGAATCCAGGAGCTGGTTTTTTGAAAGGATCAACGAAATA215100.11018407707414608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)