FastQCFastQC Report
Thu 21 Jul 2022
EGAF00006263618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19950527
Sequences flagged as poor quality0
Sequence length42
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14009117.021924784242542No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1706380.8553057270116224No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA792400.39718249046754506No Hit
AGATGCATTGGAAAAACACTTCTAGACGTTGGCTTTGGCAAG492060.24664010128654748No Hit
TGCTGTACTGGCACAATTTTTAGTAGAGACAAAGTTTCATCA422120.21158338323594159No Hit
CCTTTTCCATCTTCTCCTCCTCCTCTCTGTGTCCATAGAACA420200.21062100264318834No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA342790.17182002259890178No Hit
AGCTTATGTGGCAAAGGAGCAAATAATACATTATATGGAAAA240030.12031261129091979No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA238730.1196609994312431No Hit
GATGAAGACTAAAGAGGTACTTCTAAAAGAGATTTCATTCTA229520.11504458002537979No Hit
CTTTTTGCCTAAAAAACCTGCTTGTAACAAAGACCAAGTGGA228380.11447316654843254No Hit
GGTCCCTTTGGAGGTGTGAGTATGAGGGTATTTGTGTCTCTT226540.11355088514704399No Hit
AGAAGGAACAAATTTACAAGCAGAAAACTAACAACTCCTTTA208990.10475412504140867No Hit
AGAATTAGAGAGAGAGAGAAACAGAAAGGGAGGGAGAGAGAG206640.10357621129507004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)