FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006263619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21233069
Sequences flagged as poor quality0
Sequence length42
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20034809.43565906558303No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT811850.38235169866400376No Hit
TCTTTTTTTCATAATCAGGTTAGTGTAAGAAATTGCCATTTG492950.23216144590308638No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT490680.2310923588106835No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT490230.23088042524611022No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT463210.21815499210217798No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC334770.15766444313820108No Hit
TTTTCTTTACTATTCTTTTTAAAAAAAGTTTCACTGTGTAGA329020.15495640314643164No Hit
TTTGGCCTCTGACCCTTTTTCCACAGGGGACCTACCCCTATT251860.11861686127426986No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT241400.11369058330663363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)