FastQCFastQC Report
Tue 26 Jul 2022
EGAF00006263623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18810176
Sequences flagged as poor quality0
Sequence length42
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT259804513.811912233038118No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT902270.47967121626081544No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC589130.3131974948028131No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT557840.2965628817082839No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT507590.269848618109687No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT481350.25589872205342473No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT226420.12037101619889148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)