FastQCFastQC Report
Tue 12 Jul 2022
EGAF00006263634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006263634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22462376
Sequences flagged as poor quality0
Sequence length42
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8259553.6770598088109647No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2161600.9623202817012769No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA907770.404129109048838No Hit
CGTGCGACTAGGTAGTGTGCCTAATTTTGAATTTAGTTAATC582550.25934478169183883No Hit
TTGACGAGGGTTTTGGATCTGGTCAGAGATGTTATTTGTGGT400280.17820020464442407No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA388330.17288019753564807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)