FastQCFastQC Report
Wed 1 May 2024
EGAF00006414628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006414628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42315864
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length35-75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA22116965.226635571000039No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG14689403.471369508135294No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT6541151.5457914317902146No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACAC5189221.2263060491923312No Hit
CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT497550.1175800167993734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)