FastQCFastQC Report
Mon 8 Aug 2022
EGAF00006414689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006414689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72475137
Sequences flagged as poor quality0
Sequence length35-75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC2995030.4132493050685782No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC2620190.36152949941991835No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2178180.30054168783427065No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1586990.21897026562364413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)