FastQCFastQC Report
Mon 22 May 2023
EGAF00006419042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25742775
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCTCGCTATCTCGTATG888260.3450521554105958TruSeq Adapter, Index 14 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCTCGCTATCGCGTATG451600.17542786276926245TruSeq Adapter, Index 14 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)