FastQCFastQC Report
Thu 23 May 2024
EGAF00006419415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101961292
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19746471.9366633761368972No Hit
CGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1329290.1303720239245301No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1325850.13003464098905299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)