FastQCFastQC Report
Sun 19 May 2024
EGAF00006419422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117920206
Total Bases11.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3783580.3208593444960569No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1198100.10160260405243865No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)