FastQCFastQC Report
Sun 19 May 2024
EGAF00006419425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125322588
Total Bases12.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14042981.1205466009048584No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTAT4164730.33232077843780244TruSeq Adapter, Index 6 (97% over 36bp)
CGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1381680.11024987769962108No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)