FastQCFastQC Report
Sun 19 May 2024
EGAF00006419439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124299640
Total Bases12.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9027450.7262651766328527No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT2040850.16418792524258316TruSeq Adapter, Index 19 (97% over 38bp)
CGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1365700.10987159737550327No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)