FastQCFastQC Report
Sun 19 May 2024
EGAF00006419505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006419505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118622057
Total Bases11.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3458200.29153094183824513No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT1269940.10705766129144093TruSeq Adapter, Index 19 (97% over 38bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)